HL_8ZDB_015

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8ZDB|1|2|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_015 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.5521

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.4

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZDB|1|2|U|885
8ZDB|1|2|A|886
8ZDB|1|2|U|887
8ZDB|1|2|U|888
8ZDB|1|2|U|889
8ZDB|1|2|U|890
8ZDB|1|2|G|891
8ZDB|1|2|U|892
8ZDB|1|2|U|893
8ZDB|1|2|G|894
8ZDB|1|2|G|895
8ZDB|1|2|U|896
8ZDB|1|2|U|897
8ZDB|1|2|U|898
8ZDB|1|2|U|899
8ZDB|1|2|C|900
8ZDB|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS17