HL_8ZDB_016

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_016 not in the Motif Atlas

Homologous match to HL_8P9A_209

Geometric discrepancy: 0.2159

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8ZDB|1|2|A|957
8ZDB|1|2|G|958
8ZDB|1|2|G|959
8ZDB|1|2|U|960
8ZDB|1|2|G|961
8ZDB|1|2|A|962
8ZDB|1|2|A|963
8ZDB|1|2|A|964
8ZDB|1|2|U|965
8ZDB|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain p

Serine/threonine-protein kinase RIO3