HL_8ZDB_024

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_024 not in the Motif Atlas

Homologous match to HL_8P9A_217

Geometric discrepancy: 0.0855

The information below is about HL_8P9A_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZDB|1|2|A|1353
8ZDB|1|2|G|1354
8ZDB|1|2|C|1355
8ZDB|1|2|G|1356
8ZDB|1|2|A|1357
8ZDB|1|2|U|1358

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain C

Small ribosomal subunit protein uS5