HL_8ZDD_003

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8ZDD|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDD_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1532

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8ZDD|1|2|G|156
8ZDD|1|2|U|157
8ZDD|1|2|A|158
8ZDD|1|2|A|159
8ZDD|1|2|U|160
8ZDD|1|2|U|161
8ZDD|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

Small ribosomal subunit protein eS24