HL_8ZDD_011

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDD_011 not in the Motif Atlas

Geometric match to HL_3AM1_003

Geometric discrepancy: 0.1336

The information below is about HL_3AM1_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZDD|1|2|C|539
8ZDD|1|2|U|540
8ZDD|1|2|U|541
8ZDD|1|2|U|542
8ZDD|1|2|C|543
8ZDD|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain p

Serine/threonine-protein kinase RIO3