HL_8ZDD_015

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8ZDD|1|2|U|887, 8ZDD|1|2|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDD|1|2|U|885
8ZDD|1|2|A|886
8ZDD|1|2|U|887
8ZDD|1|2|U|888
8ZDD|1|2|U|889
8ZDD|1|2|U|890
8ZDD|1|2|G|891
8ZDD|1|2|U|892
8ZDD|1|2|U|893
8ZDD|1|2|G|894
8ZDD|1|2|G|895
8ZDD|1|2|U|896
8ZDD|1|2|U|897
8ZDD|1|2|U|898
8ZDD|1|2|U|899
8ZDD|1|2|C|900
8ZDD|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS17