HL_8ZFF_004

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8ZFF|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_004 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2734

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZFF|1|A|G|259
8ZFF|1|A|G|260
8ZFF|1|A|U|261
8ZFF|1|A|A|262
8ZFF|1|A|A|263
8ZFF|1|A|C|264
8ZFF|1|A|G|265
8ZFF|1|A|G|266
8ZFF|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20