HL_8ZFF_006

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_006 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1273

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZFF|1|A|A|320
8ZFF|1|A|A|321
8ZFF|1|A|C|322
8ZFF|1|A|U|323
8ZFF|1|A|G|324
8ZFF|1|A|A|325
8ZFF|1|A|G|326
8ZFF|1|A|A|327
8ZFF|1|A|C|328
8ZFF|1|A|A|329
8ZFF|1|A|C|330
8ZFF|1|A|G|331
8ZFF|1|A|G|332
8ZFF|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20