HL_8ZFF_023

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8ZFF|1|A|C|1136, 8ZFF|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_023 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.342

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFF|1|A|G|1134
8ZFF|1|A|U|1135
8ZFF|1|A|C|1136
8ZFF|1|A|C|1137
8ZFF|1|A|G|1138
8ZFF|1|A|G|1139
8ZFF|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9