HL_8ZFF_027
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8ZFF|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFF_027 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.1934
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZFF|1|A|G|1356
8ZFF|1|A|A|1357
8ZFF|1|A|U|1358
8ZFF|1|A|C|1359
8ZFF|1|A|A|1360
8ZFF|1|A|G|1361
8ZFF|1|A|A|1362
8ZFF|1|A|A|1363
8ZFF|1|A|U|1364
8ZFF|1|A|G|1365
8ZFF|1|A|C|1366
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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