HL_8ZFF_036

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8ZFF|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_036 not in the Motif Atlas

Geometric match to HL_8B0X_036

Geometric discrepancy: 0.1098

The information below is about HL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8ZFF|1|a|U|137
8ZFF|1|a|U|138
8ZFF|1|a|U|139
8ZFF|1|a|C|140
8ZFF|1|a|G|141
8ZFF|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23