HL_8ZFF_047

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8ZFF|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_047 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.1917

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZFF|1|a|C|487
8ZFF|1|a|G|488
8ZFF|1|a|G|489
8ZFF|1|a|C|490
8ZFF|1|a|G|491
8ZFF|1|a|A|492
8ZFF|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22