HL_8ZFF_074

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8ZFF|1|a|A|1780, 8ZFF|1|a|U|1781, 8ZFF|1|a|U|1782, 8ZFF|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_074 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.0518

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZFF|1|a|U|1777
8ZFF|1|a|U|1778
8ZFF|1|a|U|1779
8ZFF|1|a|A|1780
8ZFF|1|a|U|1781
8ZFF|1|a|U|1782
8ZFF|1|a|A|1783
8ZFF|1|a|A|1784
8ZFF|1|a|A|1785
8ZFF|1|a|A|1786
8ZFF|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2