HL_8ZFG_001
3D structure
- PDB id
- 8ZFG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- 8ZFG|1|A|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFG_001 not in the Motif Atlas
- Homologous match to HL_6CZR_072
- Geometric discrepancy: 0.1524
- The information below is about HL_6CZR_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.4
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZFG|1|A|U|12
8ZFG|1|A|U|13
8ZFG|1|A|U|14
8ZFG|1|A|G|15
8ZFG|1|A|A|16
8ZFG|1|A|U|17
8ZFG|1|A|C|18
8ZFG|1|A|A|19
8ZFG|1|A|U|20
8ZFG|1|A|G|21
8ZFG|1|A|G|22
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: