HL_8ZFG_006

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_006 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1271

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZFG|1|A|A|320
8ZFG|1|A|A|321
8ZFG|1|A|C|322
8ZFG|1|A|U|323
8ZFG|1|A|G|324
8ZFG|1|A|A|325
8ZFG|1|A|G|326
8ZFG|1|A|A|327
8ZFG|1|A|C|328
8ZFG|1|A|A|329
8ZFG|1|A|C|330
8ZFG|1|A|G|331
8ZFG|1|A|G|332
8ZFG|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20