HL_8ZFG_010

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8ZFG|1|A|A|465, 8ZFG|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_010 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.2178

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8ZFG|1|A|G|462
8ZFG|1|A|U|463
8ZFG|1|A|U|464
8ZFG|1|A|A|465
8ZFG|1|A|A|466
8ZFG|1|A|U|467
8ZFG|1|A|A|468
8ZFG|1|A|C|469
8ZFG|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains