HL_8ZFG_032

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_032 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.0897

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8ZFG|1|Z|G|54
8ZFG|1|Z|5MU|55
8ZFG|1|Z|PSU|56
8ZFG|1|Z|C|57
8ZFG|1|Z|A|58
8ZFG|1|Z|A|59
8ZFG|1|Z|A|60
8ZFG|1|Z|U|61
8ZFG|1|Z|C|62

Current chains

Chain Z

P-site tRNA-fMet

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5

Chain l

Large ribosomal subunit protein uL16