HL_8ZFG_042

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

8ZFG|1|a|U|321, 8ZFG|1|a|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_042 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.076

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8ZFG|1|a|G|319
8ZFG|1|a|A|320
8ZFG|1|a|U|321
8ZFG|1|a|A|322
8ZFG|1|a|C|323

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4