HL_8ZFG_044

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8ZFG|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_044 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3202

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZFG|1|a|A|382
8ZFG|1|a|C|383
8ZFG|1|a|A|384
8ZFG|1|a|C|385
8ZFG|1|a|G|386
8ZFG|1|a|U|387
8ZFG|1|a|G|388
8ZFG|1|a|G|389
8ZFG|1|a|U|390
8ZFG|1|a|A|391
8ZFG|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28