HL_8ZFG_070

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8ZFG|1|a|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_070 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.0951

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8ZFG|1|a|A|1630
8ZFG|1|a|G|1631
8ZFG|1|a|A|1632
8ZFG|1|a|G|1633
8ZFG|1|a|A|1634
8ZFG|1|a|A|1635
8ZFG|1|a|U|1636

Current chains

Chain a

23S rRNA

Nearby chains