HL_8ZFG_086

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_086 not in the Motif Atlas

Homologous match to HL_7A0S_057

Geometric discrepancy: 0.12

The information below is about HL_7A0S_057

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8ZFG|1|a|C|2374
8ZFG|1|a|G|2375
8ZFG|1|a|A|2376
8ZFG|1|a|A|2377
8ZFG|1|a|A|2378
8ZFG|1|a|G|2379

Current chains

Chain a

23S rRNA

Nearby chains

Chain n

Large ribosomal subunit protein uL18