HL_8ZFI_001
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFI_001 not in the Motif Atlas
- Geometric match to HL_8CRE_191
- Geometric discrepancy: 0.1697
- The information below is about HL_8CRE_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZFI|1|A|U|12
8ZFI|1|A|U|13
8ZFI|1|A|U|14
8ZFI|1|A|G|15
8ZFI|1|A|A|16
8ZFI|1|A|U|17
8ZFI|1|A|C|18
8ZFI|1|A|A|19
8ZFI|1|A|U|20
8ZFI|1|A|G|21
8ZFI|1|A|G|22
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: