HL_8ZFI_005

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8ZFI|1|A|U|209, 8ZFI|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_005 not in the Motif Atlas

Geometric match to HL_8CRE_195

Geometric discrepancy: 0.2109

The information below is about HL_8CRE_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8ZFI|1|A|C|207
8ZFI|1|A|U|208
8ZFI|1|A|U|209
8ZFI|1|A|C|210
8ZFI|1|A|G|211
8ZFI|1|A|G|212

Current chains

Chain A

16S rRNA

Nearby chains