HL_8ZFI_008

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_008 not in the Motif Atlas

Geometric match to HL_4LFB_008

Geometric discrepancy: 0.278

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8ZFI|1|A|A|320
8ZFI|1|A|A|321
8ZFI|1|A|C|322
8ZFI|1|A|U|323
8ZFI|1|A|G|324
8ZFI|1|A|A|325
8ZFI|1|A|G|326
8ZFI|1|A|A|327
8ZFI|1|A|C|328
8ZFI|1|A|A|329
8ZFI|1|A|C|330
8ZFI|1|A|G|331
8ZFI|1|A|G|332
8ZFI|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20