HL_8ZFI_016

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_016 not in the Motif Atlas

Geometric match to HL_8CRE_211

Geometric discrepancy: 0.1557

The information below is about HL_8CRE_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8ZFI|1|A|C|726
8ZFI|1|A|G|727
8ZFI|1|A|A|728
8ZFI|1|A|A|729
8ZFI|1|A|G|730
8ZFI|1|A|G|731

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S15

Chain U

30S ribosomal protein S21