HL_8ZFI_035

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

8ZFI|1|X|C|56, 8ZFI|1|X|G|57, 8ZFI|1|X|G|59, 8ZFI|1|X|U|60

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_035 not in the Motif Atlas

Geometric match to HL_8K1E_002

Geometric discrepancy: 0.2798

The information below is about HL_8K1E_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8ZFI|1|X|G|53
8ZFI|1|X|U|54
8ZFI|1|X|U|55
8ZFI|1|X|C|56
8ZFI|1|X|G|57
8ZFI|1|X|A|58
8ZFI|1|X|G|59
8ZFI|1|X|U|60
8ZFI|1|X|C|61

Current chains

Chain X

E-site tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA