HL_8ZFI_041
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFI_041 not in the Motif Atlas
- Geometric match to HL_6UGG_006
- Geometric discrepancy: 0.1508
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8ZFI|1|Z|G|54
8ZFI|1|Z|U|55
8ZFI|1|Z|U|56
8ZFI|1|Z|C|57
8ZFI|1|Z|G|58
8ZFI|1|Z|A|59
8ZFI|1|Z|A|60
8ZFI|1|Z|U|61
8ZFI|1|Z|C|62
Current chains
- Chain Z
- P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L16
Coloring options: