HL_8ZFI_049

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8ZFI|1|b|A|196, 8ZFI|1|b|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_049 not in the Motif Atlas

Geometric match to HL_8CRE_001

Geometric discrepancy: 0.1328

The information below is about HL_8CRE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8ZFI|1|b|G|194
8ZFI|1|b|A|195
8ZFI|1|b|A|196
8ZFI|1|b|A|197
8ZFI|1|b|C|198
8ZFI|1|b|A|199
8ZFI|1|b|U|200
8ZFI|1|b|C|201

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA

Chain m

50S ribosomal protein L15