HL_8ZFI_068

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGGGUCAUCCCGACUUACC

Length

20 nucleotides

Bulged bases

8ZFI|1|b|C|885, 8ZFI|1|b|C|888, 8ZFI|1|b|C|890, 8ZFI|1|b|U|895, 8ZFI|1|b|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|b|G|879
8ZFI|1|b|G|880
8ZFI|1|b|G|881
8ZFI|1|b|G|882
8ZFI|1|b|G|883
8ZFI|1|b|U|884
8ZFI|1|b|C|885
8ZFI|1|b|A|886
8ZFI|1|b|U|887
8ZFI|1|b|C|888
8ZFI|1|b|C|889
8ZFI|1|b|C|890
8ZFI|1|b|G|891
8ZFI|1|b|A|892
8ZFI|1|b|C|893
8ZFI|1|b|U|894
8ZFI|1|b|U|895
8ZFI|1|b|A|896
8ZFI|1|b|C|897
8ZFI|1|b|C|898

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain M

30S ribosomal protein S13

Chain Z

Transfer RNA; tRNA