HL_8ZFI_069

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8ZFI|1|b|U|958, 8ZFI|1|b|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_069 not in the Motif Atlas

Geometric match to HL_7A0S_026

Geometric discrepancy: 0.1321

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8ZFI|1|b|U|955
8ZFI|1|b|G|956
8ZFI|1|b|C|957
8ZFI|1|b|U|958
8ZFI|1|b|A|959
8ZFI|1|b|A|960
8ZFI|1|b|C|961
8ZFI|1|b|G|962

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain n

50S ribosomal protein L16