HL_8ZFI_070

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_070 not in the Motif Atlas

Geometric match to HL_5J7L_160

Geometric discrepancy: 0.1615

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZFI|1|b|G|978
8ZFI|1|b|A|979
8ZFI|1|b|A|980
8ZFI|1|b|A|981
8ZFI|1|b|C|982
8ZFI|1|b|A|983
8ZFI|1|b|A|984
8ZFI|1|b|C|985

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain r

50S ribosomal protein L20