HL_8ZFI_083

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8ZFI|1|b|A|1616, 8ZFI|1|b|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_083 not in the Motif Atlas

Geometric match to HL_9DFE_038

Geometric discrepancy: 0.1689

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8ZFI|1|b|C|1612
8ZFI|1|b|G|1613
8ZFI|1|b|A|1614
8ZFI|1|b|C|1615
8ZFI|1|b|A|1616
8ZFI|1|b|C|1617
8ZFI|1|b|A|1618
8ZFI|1|b|G|1619

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L22

Chain z

eRAP-NC