HL_8ZFI_093

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8ZFI|1|b|A|2030, 8ZFI|1|b|A|2031, 8ZFI|1|b|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_093 not in the Motif Atlas

Geometric match to HL_5J7L_183

Geometric discrepancy: 0.1246

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZFI|1|b|G|2027
8ZFI|1|b|U|2028
8ZFI|1|b|G|2029
8ZFI|1|b|A|2030
8ZFI|1|b|A|2031
8ZFI|1|b|G|2032
8ZFI|1|b|A|2033
8ZFI|1|b|U|2034
8ZFI|1|b|G|2035
8ZFI|1|b|C|2036

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L32

Chain d

50S ribosomal protein L3

Chain s

50S ribosomal protein L21