HL_8ZFI_103
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- 8ZFI|1|b|U|2473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFI_103 not in the Motif Atlas
- Geometric match to HL_4V9F_062
- Geometric discrepancy: 0.1771
- The information below is about HL_4V9F_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8ZFI|1|b|A|2471
8ZFI|1|b|G|2472
8ZFI|1|b|U|2473
8ZFI|1|b|U|2474
8ZFI|1|b|C|2475
8ZFI|1|b|A|2476
8ZFI|1|b|U|2477
8ZFI|1|b|A|2478
8ZFI|1|b|U|2479
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain Z
- Transfer RNA; tRNA
- Chain g
- 50S ribosomal protein L6
Coloring options: