HL_8ZFI_105

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_105 not in the Motif Atlas

Geometric match to HL_7A0S_061

Geometric discrepancy: 0.1533

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8ZFI|1|b|C|2551
8ZFI|1|b|U|2552
8ZFI|1|b|G|2553
8ZFI|1|b|U|2554
8ZFI|1|b|U|2555
8ZFI|1|b|C|2556
8ZFI|1|b|G|2557

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain Z

Transfer RNA; tRNA