HL_8ZHB_009
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 8ZHB|1|LA|G|304, 8ZHB|1|LA|U|305, 8ZHB|1|LA|A|308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHB_009 not in the Motif Atlas
- Homologous match to HL_8P9A_121
- Geometric discrepancy: 0.5682
- The information below is about HL_8P9A_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8ZHB|1|LA|G|303
8ZHB|1|LA|G|304
8ZHB|1|LA|U|305
8ZHB|1|LA|A|306
8ZHB|1|LA|A|307
8ZHB|1|LA|A|308
8ZHB|1|LA|U|309
8ZHB|1|LA|U|310
8ZHB|1|LA|C|311
8ZHB|1|LA|C|312
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lk
- Large ribosomal subunit protein eL36A
- Chain Lq
- Large ribosomal subunit protein eL42A
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