HL_8ZHB_015

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases

8ZHB|1|LA|U|688, 8ZHB|1|LA|A|689, 8ZHB|1|LA|A|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_015 not in the Motif Atlas

Homologous match to HL_8CRE_014

Geometric discrepancy: 0.3819

The information below is about HL_8CRE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41464.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8ZHB|1|LA|G|685
8ZHB|1|LA|U|686
8ZHB|1|LA|G|687
8ZHB|1|LA|U|688
8ZHB|1|LA|A|689
8ZHB|1|LA|A|690
8ZHB|1|LA|A|691
8ZHB|1|LA|A|692
8ZHB|1|LA|C|693

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain LN

Large ribosomal subunit protein eL13A

Chain LP

Large ribosomal subunit protein eL15A

Chain La

Large ribosomal subunit protein uL24A