HL_8ZHB_018

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

8ZHB|1|LA|C|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_018 not in the Motif Atlas

Homologous match to HL_8CRE_017

Geometric discrepancy: 0.2064

The information below is about HL_8CRE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8ZHB|1|LA|G|762
8ZHB|1|LA|U|763
8ZHB|1|LA|C|764
8ZHB|1|LA|U|765
8ZHB|1|LA|U|766
8ZHB|1|LA|C|767

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain Lk

Large ribosomal subunit protein eL36A