HL_8ZHB_060

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8ZHB|1|LA|U|2841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_060 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1596

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZHB|1|LA|C|2839
8ZHB|1|LA|G|2840
8ZHB|1|LA|U|2841
8ZHB|1|LA|U|2842
8ZHB|1|LA|C|2843
8ZHB|1|LA|A|2844
8ZHB|1|LA|U|2845
8ZHB|1|LA|A|2846
8ZHB|1|LA|G|2847

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Lo

Large ribosomal subunit protein eL40A

Chain Ta

Transfer RNA; tRNA