HL_8ZHB_065

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

8ZHB|1|LA|G|3068, 8ZHB|1|LA|A|3069, 8ZHB|1|LA|U|3070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_065 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3684

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8ZHB|1|LA|U|3067
8ZHB|1|LA|G|3068
8ZHB|1|LA|A|3069
8ZHB|1|LA|U|3070
8ZHB|1|LA|C|3071
8ZHB|1|LA|A|3072

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LW

Large ribosomal subunit protein eL22A

Chain Lf

Large ribosomal subunit protein eL31A