HL_8ZHB_090

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

8ZHB|1|S2|G|523, 8ZHB|1|S2|U|524, 8ZHB|1|S2|A|525, 8ZHB|1|S2|A|526, 8ZHB|1|S2|A|527, 8ZHB|1|S2|U|528, 8ZHB|1|S2|C|531

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|S2|A|520
8ZHB|1|S2|A|521
8ZHB|1|S2|U|522
8ZHB|1|S2|G|523
8ZHB|1|S2|U|524
8ZHB|1|S2|A|525
8ZHB|1|S2|A|526
8ZHB|1|S2|A|527
8ZHB|1|S2|U|528
8ZHB|1|S2|A|529
8ZHB|1|S2|C|530
8ZHB|1|S2|C|531
8ZHB|1|S2|U|532

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A