3D structure

PDB id
8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with A/A P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUUUUUUUAAUGAC
Length
14 nucleotides
Bulged bases
8ZHB|1|S2|U|1059, 8ZHB|1|S2|U|1063
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZHB|1|S2|G|1053
8ZHB|1|S2|U|1054
8ZHB|1|S2|U|1055
8ZHB|1|S2|U|1056
8ZHB|1|S2|U|1057
8ZHB|1|S2|U|1058
8ZHB|1|S2|U|1059
8ZHB|1|S2|U|1060
8ZHB|1|S2|A|1061
8ZHB|1|S2|A|1062
8ZHB|1|S2|U|1063
8ZHB|1|S2|G|1064
8ZHB|1|S2|A|1065
8ZHB|1|S2|C|1066

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SG
Small ribosomal subunit protein eS17A
Chain SQ
Small ribosomal subunit protein eS1A
Chain Sf
Small ribosomal subunit protein eS27A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3033 s