HL_8ZHB_102

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8ZHB|1|S2|U|1239, 8ZHB|1|S2|G|1241, 8ZHB|1|S2|A|1242, 8ZHB|1|S2|G|1243, 8ZHB|1|S2|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|S2|A|1238
8ZHB|1|S2|U|1239
8ZHB|1|S2|U|1240
8ZHB|1|S2|G|1241
8ZHB|1|S2|A|1242
8ZHB|1|S2|G|1243
8ZHB|1|S2|A|1244
8ZHB|1|S2|G|1245
8ZHB|1|S2|C|1246
8ZHB|1|S2|U|1247

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31