HL_8ZHB_116
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCUGUCAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHB_116 not in the Motif Atlas
- Homologous match to HL_7KJT_002
- Geometric discrepancy: 0.4259
- The information below is about HL_7KJT_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29732.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8ZHB|1|Tb|G|32
8ZHB|1|Tb|C|33
8ZHB|1|Tb|U|34
8ZHB|1|Tb|G|35
8ZHB|1|Tb|U|36
8ZHB|1|Tb|C|37
8ZHB|1|Tb|A|38
8ZHB|1|Tb|A|39
8ZHB|1|Tb|C|40
Current chains
- Chain Tb
- tRNA (77-MER)
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain mR
- RNA (5'-R(P*GP*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
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