3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
9AX7|1|A|U|421
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9AX7_010 not in the Motif Atlas
Homologous match to HL_5J7L_011
Geometric discrepancy: 0.3304
The information below is about HL_5J7L_011
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

9AX7|1|A|C|419
9AX7|1|A|U|420
9AX7|1|A|U|421
9AX7|1|A|C|422
9AX7|1|A|G|423
9AX7|1|A|G|424

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain D
30S ribosomal protein S4

Coloring options:


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