HL_9AX7_097

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9AX7|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX7_097 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1239

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9AX7|1|a|G|2819
9AX7|1|a|A|2820
9AX7|1|a|A|2821
9AX7|1|a|G|2822
9AX7|1|a|A|2823
9AX7|1|a|C|2824
9AX7|1|a|G|2825
9AX7|1|a|A|2826
9AX7|1|a|C|2827

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17