HL_9AX7_098

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX7_098 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.0892

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9AX7|1|a|A|2856
9AX7|1|a|G|2857
9AX7|1|a|C|2858
9AX7|1|a|G|2859
9AX7|1|a|A|2860
9AX7|1|a|U|2861

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L19