HL_9AX8_016

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9AX8|1|A|U|546, 9AX8|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_016 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1735

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9AX8|1|A|G|543
9AX8|1|A|C|544
9AX8|1|A|U|545
9AX8|1|A|U|546
9AX8|1|A|A|547
9AX8|1|A|G|548
9AX8|1|A|G|549
9AX8|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21