HL_9AX8_039

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9AX8|1|A|A|1614, 9AX8|1|A|A|1616, 9AX8|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_039 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.072

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9AX8|1|A|C|1612
9AX8|1|A|G|1613
9AX8|1|A|A|1614
9AX8|1|A|C|1615
9AX8|1|A|A|1616
9AX8|1|A|C|1617
9AX8|1|A|A|1618
9AX8|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain S

50S ribosomal protein L22