3D structure

PDB id
9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CCUCGCG
Length
7 nucleotides
Bulged bases
9AX8|1|A|C|1728, 9AX8|1|A|U|1729, 9AX8|1|A|C|1730, 9AX8|1|A|G|1731, 9AX8|1|A|C|1732
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9AX8_042 not in the Motif Atlas
Homologous match to HL_7A0S_043
Geometric discrepancy: 0.5487
The information below is about HL_7A0S_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9AX8|1|A|C|1727
9AX8|1|A|C|1728
9AX8|1|A|U|1729
9AX8|1|A|C|1730
9AX8|1|A|G|1731
9AX8|1|A|C|1732
9AX8|1|A|G|1733

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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