HL_9AX8_042

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9AX8|1|A|C|1728, 9AX8|1|A|U|1729, 9AX8|1|A|C|1730, 9AX8|1|A|G|1731, 9AX8|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_042 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.5487

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AX8|1|A|C|1727
9AX8|1|A|C|1728
9AX8|1|A|U|1729
9AX8|1|A|C|1730
9AX8|1|A|G|1731
9AX8|1|A|C|1732
9AX8|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains